VAIDS: Scientific Research Paper Proving COVID-19’s Bioengineered Spike Protein Very Similar to HIV

Uncanny similarity of unique inserts in the 2019-nCoV spike protein to HIV-1 gp120 and Gag

Authors:

Prashant Pradhan
Indian Institute of Technology Delhi

Ashutosh Kumar Pandey
Indian Institute of Technology Delhi

Indian Institute of Technology Delhi
Akhilesh Mishra

Parul Gupta at
Stanford University

Praveen Kumar Tripathi
Indian Institute of Technology Delhi

Manoj Balakrishna Menon

James Gomes

Vivekanandan Perumal at
Indian Institute of Technology Delhi

Bishwajit Kundu
Indian Institute of Technology Delhi


Abstract and Figures

We are currently witnessing a major epidemic caused by the 2019 novel coronavirus (2019- nCoV). The evolution of 2019-nCoV remains elusive. We found 4 insertions in the spike glycoprotein (S) which are unique to the 2019-nCoV and are not present in other coronaviruses. Importantly, amino acid residues in all the 4 inserts have identity or similarity to those in the HIV-1 gp120 or HIV-1 Gag. Interestingly, despite the inserts being discontinuous on the primary amino acid sequence, 3D-modelling of the 2019-nCoV suggests that they converge to constitute the receptor binding site. The finding of 4 unique inserts in the 2019-nCoV, all of which have identity /similarity to amino acid residues in key structural proteins of HIV-1 is unlikely to be fortuitous in nature. This work provides yet unknown insights on 2019-nCoV and sheds light on the evolution and pathogenicity of this virus with important implications for diagnosis of this virus.
Maximum likelihood genealogy show the evolution of 2019-nCoV: The evolutionary history was inferred by using the Maximum Likelihood method and JTT matrix-based model. The tree with the highest log likelihood (12458.88) is shown. Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using a JTT model, and then selecting the topology with superior log likelihood
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Multiple sequence alignment between spike proteins of 2019-nCoV and SARS. The sequences of spike proteins of 2019-nCoV (Wuhan-HU-1, Accession NC_045512) and of SARS CoV (GZ02, Accession AY390556) were aligned using MultiAlin software. The sites of difference are highlighted in boxes.
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Modelled homo-trimer spike glycoprotein of 2019-nCoV virus. The inserts from HIV envelop protein are shown with colored beads, present at the binding site of the protein.
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Fig.S1 Multiple sequence alignment of glycoprotein of coronaviridae family, representing all the four inserts.
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Fig.S2: All four inserts are present in the aligned 28 Wuhan 2019-nCoV virus genomes obtained from GISAID. The gap in the Bat-SARS Like CoV in the last row shows that insert 1 and 4 is very unique to Wuhan 2019-nCoV.


Continue reading at:
https://www.researchgate.net/publication/338957445_Uncanny_similarity
_of_unique_inserts_in_the_2019-nCoV_spike_protein_to_HIV-1_gp120_and_Gag


 

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